Index

A

AbstractNet (class in dunedn.networks.abstract_net) add_arguments_analysis() (in module dunedn.inference.analysis) add_arguments_inference() (in module dunedn.inference.inference) add_arguments_preprocessing() (in module dunedn.preprocessing.preprocess) add_arguments_training() (in module dunedn.training.denoise_training) add_info_columns() (in module dunedn.utils.utils)

affine (dunedn.networks.uscg.uscg_net_blocks.BatchNorm_GCN attribute) analysis() (in module dunedn.inference.analysis) analysis_main() (in module dunedn.inference.analysis) append() (dunedn.training.callbacks.History method) apply_median_subtraction() (in module dunedn.networks.utils) ask_edit_card() (in module dunedn.utils.ask_edit_card) ask_question() (in module dunedn.utils.ask_edit_card)

B

BaseGcnnDataset (class in dunedn.networks.gcnn.gcnn_dataloading) BaseModel (class in dunedn.inference.hitreco) BaseUscgDataset (class in dunedn.networks.uscg.uscg_dataloading)

batched_index_select() (in module dunedn.networks.gcnn.gcnn_net_utils) BatchNorm_GCN (class in dunedn.networks.uscg.uscg_net_blocks) BatchProfiler (class in dunedn.networks.utils)

C

calculate_pad() (in module dunedn.networks.gcnn.gcnn_net_utils) Callback (class in dunedn.training.callbacks) CallbackList (class in dunedn.training.callbacks) check() (in module dunedn.utils.utils) check_in_folder() (in module dunedn.utils.utils) check_network_is_compiled() (dunedn.networks.abstract_net.AbstractNet method) choose_conv() (in module dunedn.networks.gcnn.gcnn_net_blocks)

combine_collection_induction_results() (dunedn.training.metrics.MetricsList method) compile() (dunedn.networks.abstract_net.AbstractNet method) compute_metrics() (dunedn.training.metrics.MetricsList method) confusion_matrix() (in module dunedn.utils.utils) Conv (class in dunedn.networks.gcnn.gcnn_net_blocks) Converter (class in dunedn.networks.gcnn.gcnn_net_utils) crop_planes_and_dump() (in module dunedn.preprocessing.putils)

D

deltas (dunedn.networks.utils.BatchProfiler property) dice() (dunedn.training.losses.LossSoftDice method) DnModel (class in dunedn.inference.hitreco) DnRoiModel (class in dunedn.inference.hitreco) dunedn module dunedn.configdn module dunedn.geometry module dunedn.geometry.helpers module dunedn.geometry.pdune module dunedn.inference module dunedn.inference.analysis module dunedn.inference.hitreco module dunedn.inference.inference module dunedn.networks module dunedn.networks.abstract_net module dunedn.networks.gcnn module dunedn.networks.gcnn.gcnn_dataloading module dunedn.networks.gcnn.gcnn_net module dunedn.networks.gcnn.gcnn_net_blocks module dunedn.networks.gcnn.gcnn_net_utils module dunedn.networks.gcnn.training module dunedn.networks.gcnn.utils module dunedn.networks.model_utils module dunedn.networks.onnx module dunedn.networks.onnx.onnx_abstract_net module dunedn.networks.onnx.onnx_gcnn_net module dunedn.networks.onnx.uscg_onnx_net module dunedn.networks.onnx.utils module

dunedn.networks.uscg module dunedn.networks.uscg.training module dunedn.networks.uscg.uscg_dataloading module dunedn.networks.uscg.uscg_net module dunedn.networks.uscg.uscg_net_blocks module dunedn.networks.uscg.uscg_net_utils module dunedn.networks.uscg.utils module dunedn.networks.utils module dunedn.preprocessing module dunedn.preprocessing.preprocess module dunedn.preprocessing.putils module dunedn.scripts module dunedn.scripts.dunedn module dunedn.tests module dunedn.tests.test_config module dunedn.tests.test_networks module dunedn.training module dunedn.training.callbacks module dunedn.training.denoise_training module dunedn.training.losses module dunedn.training.metrics module dunedn.training.ssim module dunedn.utils module dunedn.utils.ask_edit_card module dunedn.utils.utils module

E

eps (dunedn.networks.uscg.uscg_net_blocks.BatchNorm_GCN attribute)

evt2planes() (in module dunedn.geometry.helpers)

F

fit() (dunedn.networks.abstract_net.AbstractNet method) forward() (dunedn.networks.gcnn.gcnn_net.GcnnNet method) (dunedn.networks.gcnn.gcnn_net_blocks.Conv method) (dunedn.networks.gcnn.gcnn_net_blocks.GConv method) (dunedn.networks.gcnn.gcnn_net_blocks.HPF method) (dunedn.networks.gcnn.gcnn_net_blocks.LPF method) (dunedn.networks.gcnn.gcnn_net_blocks.NonLocalAggregator method) (dunedn.networks.gcnn.gcnn_net_blocks.PostProcessBlock method) (dunedn.networks.gcnn.gcnn_net_blocks.PreProcessBlock method) (dunedn.networks.gcnn.gcnn_net_blocks.ROI method) (dunedn.networks.uscg.uscg_net.UscgNet method) (dunedn.networks.uscg.uscg_net_blocks.BatchNorm_GCN method) (dunedn.networks.uscg.uscg_net_blocks.GCN_Layer method) (dunedn.networks.uscg.uscg_net_blocks.Pooling_Block method) (dunedn.networks.uscg.uscg_net_blocks.Recombination_Layer method) (dunedn.networks.uscg.uscg_net_blocks.SCG_Block method) (dunedn.training.ssim.MS_SSIM method) (dunedn.training.ssim.SSIM method) (dunedn.training.ssim.STAT_SSIM method)

G

gaussian_filter() (in module dunedn.training.ssim) GCN_Layer (class in dunedn.networks.uscg.uscg_net_blocks) gcnn_inference_pass() (in module dunedn.networks.gcnn.utils) gcnn_onnx_inference_pass() (in module dunedn.networks.onnx.utils) gcnn_training() (in module dunedn.networks.gcnn.training) GcnnDataset (class in dunedn.networks.gcnn.gcnn_dataloading) GcnnNet (class in dunedn.networks.gcnn.gcnn_net) GcnnPlanesDataset (class in dunedn.networks.gcnn.gcnn_dataloading) GConv (class in dunedn.networks.gcnn.gcnn_net_blocks) get_configcard_path() (in module dunedn.utils.utils) get_cpu_info() (in module dunedn.utils.utils) get_crop() (in module dunedn.preprocessing.putils)

get_dunedn_search_path() (in module dunedn.configdn) get_hits_from_clear_images() (in module dunedn.networks.utils) get_loss() (in module dunedn.training.losses) get_metric() (in module dunedn.training.losses) get_models() (in module dunedn.inference.hitreco) get_nb_cpu_cores() (in module dunedn.utils.utils) get_onnx_models() (in module dunedn.inference.hitreco) get_output_path() (in module dunedn.configdn) get_planes_and_dump() (in module dunedn.preprocessing.putils) get_planes_from_setup() (dunedn.networks.uscg.uscg_dataloading.UscgDataset method) get_stats() (dunedn.networks.utils.BatchProfiler method) get_supported_models() (in module dunedn.networks.utils)

H

History (class in dunedn.training.callbacks)

hook() (dunedn.training.callbacks.CallbackList method) HPF (class in dunedn.networks.gcnn.gcnn_net_blocks)

I

inference() (in module dunedn.inference.inference) inference_main() (in module dunedn.inference.inference)

initialize_output_folder() (in module dunedn.utils.utils) is_compiled (dunedn.networks.abstract_net.AbstractNet property)

L

laplacian_matrix() (dunedn.networks.uscg.uscg_net_blocks.SCG_Block method) load_and_compile_gcnn_network() (in module dunedn.networks.gcnn.training) load_and_compile_uscg_network() (in module dunedn.networks.uscg.training) load_runcard() (in module dunedn.utils.utils) local_mask() (in module dunedn.networks.gcnn.gcnn_net_utils) Loss (class in dunedn.training.losses) LossBce (class in dunedn.training.losses) LossBceDice (class in dunedn.training.losses)

LossCfnm (class in dunedn.training.losses) LossImae (class in dunedn.training.losses) LossMse (class in dunedn.training.losses) LossPsnr (class in dunedn.training.losses) LossSoftDice (class in dunedn.training.losses) LossSsim (class in dunedn.training.losses) LossSsimL1 (class in dunedn.training.losses) LossSsimL2 (class in dunedn.training.losses) LPF (class in dunedn.networks.gcnn.gcnn_net_blocks)

M

main() (in module dunedn.scripts.dunedn) make_dict_compatible() (in module dunedn.networks.gcnn.utils) (in module dunedn.networks.uscg.utils) median_subtraction() (in module dunedn.utils.utils) MetricsList (class in dunedn.training.metrics) module dunedn dunedn.configdn dunedn.geometry dunedn.geometry.helpers dunedn.geometry.pdune dunedn.inference dunedn.inference.analysis dunedn.inference.hitreco dunedn.inference.inference dunedn.networks dunedn.networks.abstract_net dunedn.networks.gcnn dunedn.networks.gcnn.gcnn_dataloading dunedn.networks.gcnn.gcnn_net dunedn.networks.gcnn.gcnn_net_blocks dunedn.networks.gcnn.gcnn_net_utils dunedn.networks.gcnn.training dunedn.networks.gcnn.utils dunedn.networks.model_utils dunedn.networks.onnx dunedn.networks.onnx.onnx_abstract_net dunedn.networks.onnx.onnx_gcnn_net dunedn.networks.onnx.uscg_onnx_net dunedn.networks.onnx.utils dunedn.networks.uscg dunedn.networks.uscg.training dunedn.networks.uscg.uscg_dataloading dunedn.networks.uscg.uscg_net dunedn.networks.uscg.uscg_net_blocks dunedn.networks.uscg.uscg_net_utils dunedn.networks.uscg.utils dunedn.networks.utils dunedn.preprocessing dunedn.preprocessing.preprocess dunedn.preprocessing.putils dunedn.scripts dunedn.scripts.dunedn dunedn.tests dunedn.tests.test_config dunedn.tests.test_networks dunedn.training dunedn.training.callbacks dunedn.training.denoise_training dunedn.training.losses dunedn.training.metrics dunedn.training.ssim dunedn.utils dunedn.utils.ask_edit_card dunedn.utils.utils

momentum (dunedn.networks.uscg.uscg_net_blocks.BatchNorm_GCN attribute) moving_average() (in module dunedn.utils.utils) MS_SSIM (class in dunedn.training.ssim) ms_ssim() (in module dunedn.training.ssim) MyDataParallel (class in dunedn.networks.model_utils) MyDDP (class in dunedn.networks.model_utils)

N

NonLocalAggregator (class in dunedn.networks.gcnn.gcnn_net_blocks)

NonLocalGraph (class in dunedn.networks.gcnn.gcnn_net_blocks) num_features (dunedn.networks.uscg.uscg_net_blocks.BatchNorm_GCN attribute)

O

on_epoch_begin() (dunedn.training.callbacks.Callback method) (dunedn.training.callbacks.CallbackList method) on_epoch_end() (dunedn.training.callbacks.Callback method) (dunedn.training.callbacks.CallbackList method) (dunedn.training.callbacks.History method) on_eval_begin() (dunedn.training.callbacks.Callback method) (dunedn.training.callbacks.CallbackList method) on_eval_end() (dunedn.training.callbacks.Callback method) (dunedn.training.callbacks.CallbackList method) on_train_batch_begin() (dunedn.training.callbacks.Callback method) (dunedn.training.callbacks.CallbackList method) on_train_batch_end() (dunedn.training.callbacks.Callback method) (dunedn.training.callbacks.CallbackList method) (dunedn.training.callbacks.History method)

on_train_begin() (dunedn.training.callbacks.Callback method) (dunedn.training.callbacks.CallbackList method) (dunedn.training.callbacks.History method) on_train_end() (dunedn.training.callbacks.Callback method) (dunedn.training.callbacks.CallbackList method) onnx_export() (dunedn.inference.hitreco.BaseModel method) (dunedn.networks.gcnn.gcnn_net.GcnnNet method) (dunedn.networks.uscg.uscg_net.UscgNet method) OnnxGcnnNetwork (class in dunedn.networks.onnx.onnx_gcnn_net) OnnxNetwork (class in dunedn.networks.onnx.onnx_abstract_net)

P

pairwise_dist() (in module dunedn.networks.gcnn.gcnn_net_utils) path_constructor() (in module dunedn.utils.utils) path_representer() (in module dunedn.utils.utils) planes2evt() (in module dunedn.geometry.helpers) planes2tiles() (dunedn.networks.gcnn.gcnn_net_utils.Converter method) Pooling_Block (class in dunedn.networks.uscg.uscg_net_blocks) PostProcessBlock (class in dunedn.networks.gcnn.gcnn_net_blocks) predict() (dunedn.inference.hitreco.BaseModel method) (dunedn.networks.abstract_net.AbstractNet method) (dunedn.networks.gcnn.gcnn_net.GcnnNet method) (dunedn.networks.onnx.onnx_gcnn_net.OnnxGcnnNetwork method) (dunedn.networks.uscg.uscg_net.UscgNet method)

preprocess() (in module dunedn.preprocessing.preprocess) preprocess_main() (in module dunedn.preprocessing.preprocess) PreProcessBlock (class in dunedn.networks.gcnn.gcnn_net_blocks) print_cfnm() (in module dunedn.networks.utils) print_epoch_logs() (in module dunedn.networks.utils) print_metrics() (dunedn.training.metrics.MetricsList method) print_stats() (dunedn.networks.utils.BatchProfiler method)

Q

question_instance() (in module dunedn.utils.ask_edit_card)

R

Recombination_Layer (class in dunedn.networks.uscg.uscg_net_blocks) reset() (dunedn.training.callbacks.History method) ROI (class in dunedn.networks.gcnn.gcnn_net_blocks) RoiModel (class in dunedn.inference.hitreco)

run_test() (in module dunedn.tests.test_networks) run_test_cnn() (in module dunedn.tests.test_networks) run_test_gcnn() (in module dunedn.tests.test_networks) run_test_uscg() (in module dunedn.tests.test_networks)

S

save_normalization_info() (in module dunedn.preprocessing.putils) save_runcard() (in module dunedn.utils.utils) SCG_Block (class in dunedn.networks.uscg.uscg_net_blocks) set_iterable() (dunedn.networks.utils.BatchProfiler method) smooth() (in module dunedn.utils.utils)

Ssim (class in dunedn.training.losses) SSIM (class in dunedn.training.ssim) ssim() (in module dunedn.training.ssim) stat_gaussian_filter() (in module dunedn.training.ssim) STAT_SSIM (class in dunedn.training.ssim) stat_ssim() (in module dunedn.training.ssim)

T

test_networks() (in module dunedn.tests.test_networks) thresholding_dn() (in module dunedn.inference.inference) tiles2planes() (dunedn.networks.gcnn.gcnn_net_utils.Converter method) time_windows() (in module dunedn.networks.uscg.utils) timed_input() (in module dunedn.utils.ask_edit_card) TimeOutError to_crops() (dunedn.networks.gcnn.gcnn_dataloading.GcnnDataset method) (dunedn.networks.gcnn.gcnn_dataloading.GcnnPlanesDataset method) to_data_parallel() (dunedn.networks.abstract_net.AbstractNet method) to_planes() (dunedn.networks.gcnn.gcnn_dataloading.GcnnDataset method) (dunedn.networks.gcnn.gcnn_dataloading.GcnnPlanesDataset method) track_running_stats (dunedn.networks.uscg.uscg_net_blocks.BatchNorm_GCN attribute) train_batch() (dunedn.networks.gcnn.gcnn_net.GcnnNet method) (dunedn.networks.uscg.uscg_net.UscgNet method) train_epoch() (dunedn.networks.abstract_net.AbstractNet method) (dunedn.networks.gcnn.gcnn_net.GcnnNet method) (dunedn.networks.uscg.uscg_net.UscgNet method) training (dunedn.networks.abstract_net.AbstractNet attribute) (dunedn.networks.gcnn.gcnn_net.GcnnNet attribute) (dunedn.networks.gcnn.gcnn_net_blocks.Conv attribute) (dunedn.networks.gcnn.gcnn_net_blocks.GConv attribute) (dunedn.networks.gcnn.gcnn_net_blocks.HPF attribute) (dunedn.networks.gcnn.gcnn_net_blocks.LPF attribute) (dunedn.networks.gcnn.gcnn_net_blocks.NonLocalAggregator attribute) (dunedn.networks.gcnn.gcnn_net_blocks.PostProcessBlock attribute) (dunedn.networks.gcnn.gcnn_net_blocks.PreProcessBlock attribute) (dunedn.networks.gcnn.gcnn_net_blocks.ROI attribute) (dunedn.networks.model_utils.MyDataParallel attribute) (dunedn.networks.model_utils.MyDDP attribute) (dunedn.networks.uscg.uscg_net.UscgNet attribute) (dunedn.networks.uscg.uscg_net_blocks.GCN_Layer attribute) (dunedn.networks.uscg.uscg_net_blocks.Pooling_Block attribute) (dunedn.networks.uscg.uscg_net_blocks.Recombination_Layer attribute) (dunedn.networks.uscg.uscg_net_blocks.SCG_Block attribute) (dunedn.training.ssim.MS_SSIM attribute) (dunedn.training.ssim.SSIM attribute) (dunedn.training.ssim.STAT_SSIM attribute)

training() (in module dunedn.training.denoise_training) training_main() (in module dunedn.training.denoise_training)

U

uscg_inference_pass() (in module dunedn.networks.uscg.utils) uscg_training() (in module dunedn.networks.uscg.training)

UscgDataset (class in dunedn.networks.uscg.uscg_dataloading) UscgNet (class in dunedn.networks.uscg.uscg_net) UscgPlanesDataset (class in dunedn.networks.uscg.uscg_dataloading)

W

weight_xavier_init() (in module dunedn.networks.uscg.uscg_net_utils)